df <- brglm2::endometrial
set.seed(525243)
fit <- MCMCglmm::MCMCglmm(
NV ~ EH + HG,
family = "categorical",
data = df,
prior = list(
B = list(
mu = rep(0, 3),
V = MCMCglmm::gelman.prior(
~ EH + HG,
data = df,
scale = sqrt(pi^2/3+1)
)
),
R = list(V = 1, fix = 1)
),
nitt = 100000,
burnin = 1000,
thin = 10,
verbose = FALSE
)
summary(fit)
#>
#> Iterations = 1001:99991
#> Thinning interval = 10
#> Sample size = 9900
#>
#> DIC: 42.77461
#>
#> R-structure: ~units
#>
#> post.mean l-95% CI u-95% CI eff.samp
#> units 1 1 1 0
#>
#> Location effects: NV ~ EH + HG
#>
#> post.mean l-95% CI u-95% CI eff.samp pMCMC
#> (Intercept) -1.3239 -4.6634 1.8131 1430.6 0.43071
#> EH -1.8184 -3.4936 -0.1290 987.7 0.03131 *
#> HG 2.9383 0.8804 5.1687 733.0 0.00182 **
#> ---
#> Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Post #153
127
Пример:
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