New Software and Library Updates

August is a notoriously quiet month without big news, but there is something new in the graph software:

- Uni-Fold - a re-implemented AlphaFold and AlphaFold-Multimer in PyTorch. The authors emphasize this is the first open-source repo for training AlphaFold-Multimer and their AlphaFold implementation can be trained 2x faster than the original.

- PyKEEN 1.9 features new tools for adding textual representations to KG embedding models as well as adds significant speedups of NodePiece on large graphs (5M nodes / 30M edges in 10 minutes on a laptop) thanks to the METIS partitioning algorithm and GPU-accelerated BFS.

- GRAPE - a Rust/Python library for graph processing and embedding with many compbio datasets integrated.